Co Dmg 2pyridine Chloride Bf2

Acta Crystallogr Sect E Struct Rep Online. 2010 Jul 1; 66(Pt 7): o1563.

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Incubated into 6 mL 10 mM aqueous solution of Co(DMG)2Cl2. The 2-((pyridine-4-ylmethyl)amino)ethane-1-thiol was functionalized onto the TNPs’ surface using Au-S bond leaving the pyridine group free onto the surface which further attached to Co(DMG)2Cl2. 2,6-Dimethylanilinium chloride monohydrate Wajda Smirani, Olfa Amri and Mohamed Rzaigui S1. Comment As part of our ongoing studies of organic-inorganic hybrid networks containing the 2,6-xylidinium cation (Mrad et al., 2006; Abid et al., 2007) we now report the synthesis and structure of the title compound, (I).

Published online 2010 Jun 5. doi: 10.1107/S1600536810020568
PMID: 21587806
This article has been cited by other articles in PMC.

Associated Data

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810020568/pv2285sup1.cif

GUID: 84FFB5E8-E417-4515-AF8D-0BC33CCCFE3D

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810020568/pv2285Isup2.hkl

GUID: 1864A7E0-5E75-46D4-9D03-209CC6D508D0
Chloride

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Abstract

In the crystal structure of the title compound, C8H12N+·Cl, all H atoms bonded to the ammonium N atom are hydrogen bonded to the chloride ions, with N⋯Cl distances in the range 3.080 (2)–3.136 (2) Å, resulting in 16-membered macrocyclic rings involving four formula units of the title compound.

Related literature

For background to phase transition materials see: Li et al. (2008 ▶); Zhang et al. (2009).

Experimental

Crystal data

  • C8H12N+·Cl

  • Mr = 157.64

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  • Monoclinic,

  • a = 9.4739 (19) Å

  • b = 9.894 (2) Å

  • c = 9.6709 (19) Å

  • β = 96.31 (3)°

  • V = 901.0 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.35 mm−1

  • T = 293 K

  • 0.4 × 0.3 × 0.2 mm

Data collection

  • Rigaku Mercury2 diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) Tmin = 0.880, Tmax = 0.932

  • 9081 measured reflections

  • 2068 independent reflections

  • 1585 reflections with I > 2σ(I)

  • Rint = 0.038

Refinement

  • R[F2 > 2σ(F2)] = 0.047

  • wR(F2) = 0.150

  • S = 1.01

  • 2068 reflections

  • 91 parameters

  • H-atom parameters constrained

  • Δρmax = 0.38 e Å−3

  • Δρmin = −0.28 e Å−3

Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: PRPKAPPA (Ferguson, 1999 ▶).

Table 1

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯Cl1i0.892.273.136 (2)164
N1—H1B⋯Cl1ii0.892.273.128 (2)163
N1—H1C⋯Cl10.892.203.080 (2)170

Symmetry codes: (i) ; (ii) .

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810020568/pv2285sup1.cif

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810020568/pv2285Isup2.hkl

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Acknowledgments

The author is grateful to the starter fund of Southeast University for financial support to purchase the diffractometer.

supplementary crystallographic information

Comment

There has been interest in the study of phase transition materials, includingorganic ligands, metal-organic coordination compounds, organic-inorganichybrids, etc. (Li et al., 2008; Zhang et al.,2009).Exploring the phase transition materials, the dielectric properties of thetitle compound, have been investigated in my laboratory. Unfortunately, therewas no distinct anomaly observed from 93 K to 380 K, (m.p. 408 K-410 K).In this article, the crystal structure of the title compound has beenpresented.

The asymmetric unit of the title compound containsa 2,4-dimethylanilinium cation and a chloride anion (Fig. 1).The non-H atoms of the 2,4-dimethylanilinium cation are essentially coplanar.In the crystal structure, all hydrogen atoms bonded to the ammoniumnitrogen (N1) are hydrogen bonded to the chloride ions with N···Cl distancesin the range 3.080 (2) - 3.136 (2) Å; four formula units of the titlecompound are hydrogen bonded to form sixteen membered macrocyclic rings inthe bc-plane (Tab. 1, Fig. 2).

Experimental

The title compound was prepared by the reaction of2,4-dimethylbenzenamine (1.21 g, 10 mmol) and hydrochloric acid solution(1.01 g, 10 mmol) in 30 ml methanol. The reaction mixture was filtered andleft at room temperature for 4 days. Colorlesscrystals were obtained by slow evaporation.

Refinement

Positional parameters of all H atoms were calculated geometrically and wereallowed to ride on the atoms to which they are bonded, with N—H = 0.89 Åand C—H = 0.93 and 0.96 Å, for aryl and methyl type H-atoms, respectively,Uiso(H) = 1.2 to 1.5Ueq(C/N).

Figures

The molecular structure of the title compound, showing the atomic numbering scheme. Displacement ellipsoids are drawn at the 30% probability level.

A view of the packing of the title compound, showing H-bonded bands along the c-axis; dashed lines indicate hydrogen bonds.

Crystal data

C8H12N+·Cl
F(000) = 336
Mr = 157.64Dx = 1.162 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7851 reflections
a = 9.4739 (19) Åθ = 3.2–27.5°
b = 9.894 (2) ŵ = 0.35 mm1
c = 9.6709 (19) ÅT = 293 K
β = 96.31 (3)°Prism, colourless
V = 901.0 (3) Å30.4 × 0.3 × 0.2 mm
Z = 4

Data collection

Rigaku Mercury2 diffractometer
2068 independent reflections
Radiation source: fine-focus sealed tube1585 reflections with I > 2σ(I)
graphiteRint = 0.038
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.5°
CCD_Profile_fitting scansh = −12→12
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −12→12
Tmin = 0.880, Tmax = 0.932l = −12→12
9081 measured reflections

Refinement

Refinement on F2
Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.150H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0863P)2 + 0.190P] where P = (Fo2 + 2Fc2)/3
2068 reflections(Δ/σ)max < 0.001
91 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.28 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factorwR and goodness of fit S are based on F2, conventionalR-factors R are based on F, with F set to zero fornegative F2. The threshold expression of F2 >σ(F2) is used only for calculating R-factors(gt) etc.and is not relevant to the choice of reflections for refinement.R-factors based on F2 are statistically about twice as largeas those based on F, and R- factors based on ALL data will beeven larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x
yzUiso*/Ueq
N10.61300 (18)0.39383 (17)0.84555 (17)0.0480 (4)
H1A0.57980.47790.83700.072*
H1B0.59680.36080.92790.072*
H1C0.56940.34260.77830.072*
C10.7662 (2)0.39422 (18)0.8348 (2)0.0436 (5)
C30.9610 (2)0.4527 (2)0.7141 (2)0.0538 (5)
H3A0.99720.49330.63880.065*
C20.8145 (2)0.4537 (2)0.7185 (2)0.0473 (5)
C60.8563 (2)0.3347 (2)0.9380 (2)0.0533 (5)
H6A0.82050.29461.01380.064*
C41.0551 (2)0.3944 (2)0.8157 (2)0.0562 (5)
C51.0013 (3)0.3352 (2)0.9280 (3)0.0609 (6)
H5A1.06280.29510.99770.073*
C80.7157 (3)0.5163 (3)0.6043 (2)0.0658 (7)
H8A0.65910.58430.64270.099*
H8B0.65470.44780.56000.099*
H8C0.77000.55670.53700.099*
C71.2133 (3)0.3985 (3)0.8049 (3)0.0834 (9)
H7A1.26290.35450.88430.125*
H7B1.24400.49080.80180.125*
H7C1.23320.35290.72160.125*
Cl10.49251 (6)0.19132 (5)0.62110 (6)0.0603 (2)

Atomic displacement parameters (Å2)

U11
U22U33U12U13U23
N10.0525 (10)0.0481 (9)0.0456 (9)−0.0007 (7)0.0146 (7)−0.0017 (7)
C10.0499 (11)0.0389 (10)0.0434 (10)0.0000 (8)0.0116 (8)−0.0035 (7)
C30.0564 (12)0.0585 (13)0.0494 (11)−0.0015 (10)0.0185 (9)−0.0012 (9)
C20.0545 (12)0.0456 (10)0.0436 (10)0.0024 (8)0.0126 (8)0.0004 (8)
C60.0638 (14)0.0515 (12)0.0454 (11)0.0031 (9)0.0090 (10)0.0047 (9)
C40.0512 (12)0.0599 (13)0.0583 (12)0.0030 (10)0.0098 (10)−0.0126 (10)
C50.0619 (14)0.0652 (14)0.0542 (12)0.0134 (11)−0.0002 (10)−0.0005 (11)
C80.0661 (14)0.0782 (16)0.0543 (13)0.0066 (12)0.0122 (11)0.0231 (12)
C70.0516 (14)0.111 (2)0.0883 (19)0.0052 (14)0.0084 (13)−0.0130 (17)
Cl10.0705 (4)0.0570 (4)0.0571 (4)−0.0126 (2)0.0235 (3)−0.0140 (2)

Geometric parameters (Å, °)

N1—C1
1.466 (3)C6—H6A0.9300
N1—H1A0.8900C4—C51.380 (3)
N1—H1B0.8900C4—C71.514 (3)
N1—H1C0.8900C5—H5A0.9300
C1—C61.372 (3)C8—H8A0.9600
C1—C21.391 (3)C8—H8B0.9600
C3—C41.379 (3)C8—H8C0.9600
C3—C21.394 (3)C7—H7A0.9600
C3—H3A0.9300C7—H7B0.9600
C2—C81.500 (3)C7—H7C0.9600
C6—C51.388 (3)
C1—N1—H1A109.5C3—C4—C5118.2 (2)
C1—N1—H1B109.5C3—C4—C7120.4 (2)
H1A—N1—H1B109.5C5—C4—C7121.4 (2)
C1—N1—H1C109.5C4—C5—C6120.7 (2)
H1A—N1—H1C109.5C4—C5—H5A119.7
H1B—N1—H1C109.5C6—C5—H5A119.7
C6—C1—C2122.39 (19)C2—C8—H8A109.5
C6—C1—N1119.27 (17)C2—C8—H8B109.5
C2—C1—N1118.33 (18)H8A—C8—H8B109.5
C4—C3—C2123.4 (2)C2—C8—H8C109.5
C4—C3—H3A118.3H8A—C8—H8C109.5
C2—C3—H3A118.3H8B—C8—H8C109.5
C1—C2—C3116.01 (19)C4—C7—H7A109.5
C1—C2—C8122.39 (19)C4—C7—H7B109.5
C3—C2—C8121.60 (19)H7A—C7—H7B109.5
C1—C6—C5119.3 (2)C4—C7—H7C109.5
C1—C6—H6A120.3H7A—C7—H7C109.5
C5—C6—H6A120.3H7B—C7—H7C109.5

Hydrogen-bond geometry (Å, °)

Co Dmg 2 Pyridine Chloride Bf2 10

D—H···A
D—HH···AD···AD—H···A
N1—H1A···Cl1i0.892.273.136 (2)164
N1—H1B···Cl1ii0.892.273.128 (2)163
N1—H1C···Cl10.892.203.080 (2)170

Symmetry codes: (i) −x+1, y+1/2, −z+3/2; (ii) x, −y+1/2, z+1/2.

Co Dmg 2 Pyridine Chloride Bf2 3

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PV2285).

References

  • Ferguson, G. (1999). PRPKAPPA University of Guelph, Canada.
  • Li, X. Z., Qu, Z. R. & Xiong, R. G. (2008). Chin. J. Chem.11, 1959–1962.
  • Rigaku (2005). CrystalClear Rigaku Corporation, Tokyo, Japan.
  • Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [PubMed]
  • Zhang, W., Chen, L. Z., Xiong, R. G., Nakamura, T. & Huang, S. D. (2009). J. Am. Chem. Soc.131, 12544–12545. [PubMed]
Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

A spectrochemical series is a list of ligands ordered on ligand strength and a list of metal ions based on oxidation number, group and its identity. In crystal field theory, ligands modify the difference in energy between the d orbitals (Δ) called the ligand-field splitting parameter for ligands or the crystal-field splitting parameter, which is mainly reflected in differences in color of similar metal-ligand complexes.

Spectrochemical series of ligands[edit]

The spectrochemical series was first proposed in 1938 based on the results of absorption spectra of cobalt complexes.[1]

A partial spectrochemical series listing of ligands from small Δ to large Δ is given below. (For a table, see the ligand page.)

I < Br < S2− < SCN (S–bonded) < Cl< N3 < F< NCO < OH < C2O42− < O2−< H2O < acac (acetylacetonate) < NCS (N–bonded) < CH3CN < gly (glycine) < py (pyridine) < NH3 < en (ethylenediamine) < bipy (2,2'-bipyridine) < phen (1,10-phenanthroline) < NO2 < PPh3 < CN < CO

Weak field ligand: H2O,F-,Cl-,OH-Strong field ligand: CO,CN-,NH3,PPh3

Ligands arranged on the left end of this spectrochemical series are generally regarded as weaker ligands and cannot cause forcible pairing of electrons within the 3d level, and thus form outer orbital octahedral complexes that are high spin. On the other hand, ligands lying at the right end are stronger ligands and form inner orbital octahedral complexes after forcible pairing of electrons within 3d level and hence are called low spin ligands.

However, keep in mind that 'the spectrochemical series is essentially backwards from what it should be for a reasonable prediction based on the assumptions of crystal field theory.'[2] This deviation from crystal field theory highlights the weakness of crystal field theory's assumption of purely ionic bonds between metal and ligand.

The order of the spectrochemical series can be derived from the understanding that ligands are frequently classified by their donor or acceptor abilities. Some, like NH3, are σ bond donors only, with no orbitals of appropriate symmetry for π bonding interactions. Bonding by these ligands to metals is relatively simple, using only the σ bonds to create relatively weak interactions. Another example of a σ bonding ligand would be ethylenediamine, however ethylenediamine has a stronger effect than ammonia, generating a larger ligand field split, Δ.

Ligands that have occupied p orbitals are potentially π donors. These types of ligands tend to donate these electrons to the metal along with the σ bonding electrons, exhibiting stronger metal-ligand interactions and an effective decrease of Δ. Most halide ligands as well as OH are primary examples of π donor ligands.

When ligands have vacant π* and d orbitals of suitable energy, there is the possibility of pi backbonding, and the ligands may be π acceptors. This addition to the bonding scheme increases Δ. Ligands that do this very effectively include CN, CO, and many others.[3]

Spectrochemical series of metals[edit]

Co Dmg 2pyridine Chloride Bf2

The metal ions can also be arranged in order of increasing Δ, and this order is largely independent of the identity of the ligand.[4]

Mn2+ < Ni2+ < Co2+ < Fe2+ < V2+ < Fe3+ < Cr3+ < V3+ < Co3+

Co Dmg 2 Pyridine Chloride Bf2 6

In general, it is not possible to say whether a given ligand will exert a strong field or a weak field on a given metal ion. However, when we consider the metal ion, the following two useful trends are observed:

  • Δ increases with increasing oxidation number, and
  • Δ increases down a group.[4]

See also[edit]

References[edit]

Co Dmg 2 Pyridine Chloride Bf2 1

  • Zumdahl, Steven S. Chemical Principles Fifth Edition. Boston: Houghton Mifflin Company, 2005. Pages 550-551 and 957-964.
  • D. F. Shriver and P. W. Atkins Inorganic Chemistry 3rd edition, Oxford University Press, 2001. Pages: 227-236.
  • James E. Huheey, Ellen A. Keiter, and Richard L. Keiter Inorganic Chemistry: Principles of Structure and Reactivity 4th edition, HarperCollins College Publishers, 1993. Pages 405-408.

Co Dmg 2 Pyridine Chloride Bf2 4

  1. ^R. Tsuchida (1938). 'Absorption Spectra of Co-ordination Compounds. I.'Bull. Chem. Soc. Jpn. 13 (5). doi:10.1246/bcsj.13.388.
  2. ^7th page of http://science.marshall.edu/castella/chm448/chap11.pdf
  3. ^Miessler, Gary; Tarr, Donald (2011). Inorganic Chemistry (4th ed.). Prentice Hall. pp. 395–396. ISBN978-0-13-612866-3.
  4. ^ abhttp://www.everyscience.com/Chemistry/Inorganic/Crystal_and_Ligand_Field_Theories/b.1013.php

Co Dmg 2 Pyridine Chloride Bf2 Download

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